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Formation of features based on computational topology methods
S.N. Chukanov 1

Sobolev Institute of Mathematics, SB RAS, Omsk Branch,
644043, Omsk, Russia, st. Pevtsova 13

 PDF, 844 kB

DOI: 10.18287/2412-6179-CO-1190

Pages: 482-490.

Full text of article: Russian language.

Abstract:

The use of traditional methods of algebraic topology to obtain information about the shape of an object is associated with the problem of forming a small amount of information, namely, Betti numbers and Euler characteristics. The central tool for topological data analysis is the persistent homology method, which summarizes the geometric and topological information in the data using persistent diagrams and barcodes. Based on persistent homology methods, topological data can be analyzed to obtain information about the shape of an object. The construction of persistent barcodes and persistent diagrams in computational topology does not allow one to construct a Hilbert space with a scalar product. The possibility of applying the methods of topological data analysis is based on mapping persistent diagrams into a Hilbert space; one of the ways of such mapping is a method of constructing a persistence landscape. It has an advantage of being reversible, so it does not lose any information and has persistence properties.
     The paper considers mathematical models and functions for representing persistence landscape objects based on the persistent homology method. Methods for converting persistent barcodes and persistent diagrams into persistence landscape functions are considered. Associated with persistence landscape functions is a persistence landscape kernel that forms a mapping into a Hilbert space with a dot product. A formula is proposed for determining a distance between the persistence landscapes, which allows the distance between images of objects to be found.
     The persistence landscape functions map persistent diagrams into a Hilbert space. Examples of determining the distance between images based on the construction of persistence landscape functions for these images are given. Representations of topological characteristics in various models of computational topology are considered. Results for one-parameter persistence modules are extended onto multi-parameter persistence modules.

Keywords:
pattern recognition, multivariate persistent landscape, Hilbert space. topological data analysis.

Citation:
Chukanov SN. Formation of features based on computational topology methods. Computer Optics 2023; 47(2): 482-490. DOI: 10.18287/2412-6179-CO-1190.

Acknowledgements:
This work was supported by the Basic Research Program of the Siberian Branch of the Russian Academy of Sciences I.5.1, Project no. 0314-2019-0020 and the Russian Science Foundation, Project no. 22-21-00035.

References:

  1. Carlsson G. Topology and data. Bulletin of the American Mathematical Society 2009; 46(2): 255-308. DOI: 10.1090/S0273-0979-09-01249-X.
  2. Edelsbrunner H, Harer JL. Computational topology: an introduction. American Mathematical Society, 2010. ISBN: 978-0-8218-4925-5.
  3. Kusano G, Hiraoka Y, Fukumizu K. Persistence weighted Gaussian kernel for topological data analysis. Int Conf on Machine Learning (PMLR) 2016: 2004-2013.
  4. Hofer C, et al. Deep learning with topological signatures. NIPS'17: Proc 31st Int Conf on Neural Information Processing Systems 2017: 1633-1643.
  5. Hatcher A. Algebraic topology. Cambridge UP; 2005. ISBN: 978-0-521-79160-1.
  6. Zomorodian AJ. Topology for computing. Cambridge University Press; 2005. ISBN: 978-0-521-83666-1.
  7. Bubenik P. The persistence landscape and some of its properties. In Book: Topological data analysis. Cham: Springer; 2020: 97-117. DOI: 10.1007/978-3-030-43408-3_4.
  8. Pun CS, Xia K, Lee SX. Persistent-homology-based machine learning and its applications--A survey. arXiv preprint. 2018. Source: <https://arxiv.org/abs/1811.00252>. DOI: 10.48550/arXiv.1811.00252.
  9. Ghrist R. Barcodes: the persistent topology of data. Bulletin of the American Mathematical Society 2008; 45(1): 61-75. DOI: 10.1090/S0273-0979-07-01191-3.
  10. Mischaikow K, Nanda V. Morse theory for filtrations and efficient computation of persistent homology. Discrete & Computational Geometry 2013; 50(2): 330-353. DOI: 10.1007/s00454-013-9529-6.
  11. Xia K. A quantitative structure comparison with persistent similarity. arXiv preprint. 2017. Source: <https://arxiv.org/abs/1707.03572>. DOI: 10.48550/arXiv.1707.03572.
  12. Chukanov SN. Comparison of objects' images based on computational topology methods. Informatics and Automation 2019; 18(5): 1043-1065. DOI: 10.15622/sp.2019.18.5.1043-1065.
  13. Chukanov SN. The comparison of diffeomorphic images based on the construction of persistent homology. Automatic Control and Computer Sciences 2020; 54(7): 758-771. DOI: 10.3103/S0146411620070056.
  14. Vipond O. Multiparameter persistence landscapes. J Mach Learn Res 2020; 21(61): 1-38.
  15. Botnan MB, Lesnick M. An introduction to multiparameter persistence. arXiv preprint. 2022. Source: <https://arxiv.org/abs/2203.14289>. DOI: 10.48550/arXiv.2203.14289.
  16. Adcock A, Carlsson E, Carlsson G. The ring of algebraic functions on persistence bar codes. arXiv preprint. 2013. Source: <https://arxiv.org/abs/1304.0530>.
  17. Kwitt R, et al. Statistical topological data analysis-a kernel perspective. NIPS'15: Proc 28th Int Conf on Neural Information Processing Systems 2015; 2: 3070-3078.
  18. Sriperumbudur BK, Fukumizu K, Lanckriet GRG. Universality, characteristic kernels and RKHS embedding of measures. J Mach Learn Res 2011; 12(7): 2389-2410.

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